Send Data from GenePattern to IGV

If GenomeSpace does not know how to convert a file you are sending, it will display the  icon next to the file name. You can still send the file, but the receiving tool may not be able to accept it.

1. Send your file from GenePattern to GenomeSpace.

  1. In GenePattern, click the down arrow next to the job results file you want to send to IGV.

  1. In the menu within the drop-down menu, select the location in your GenomeSpace directory structure in which you'd like to save the file and click Save.

2. Send your file from GenomeSpace to IGV.

  1. Left-click on the file you just uploaded to GenomeSpaceand select IGV.

  1. In the dialog box that appears, click Launch.

IGV launch dialog